------- SECIS element -- id:1 -- grade:B ----
 Chromosome = CM007941.1:subseq_35579421,102214_ Strand = + Positions = 64811 - 64880
 Found by:  Infernal (score=14.4) Covels (score=4.8)
 Stem2 length = 9   Apical loop length = 11   Insertion in stem2 = 0, 0
 Free Energy = -16.92

         ..(((((((.......(((((((((((((((...............)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         .(((({(((.......([[{((((({((((------((.......))))))})))))}]])..--....)))})))).
 target  UGGUGUGUUUGGACCAUGAUAGUUUGUUGG------UGAUGUGGACACCAAGGAACUUGAAAA--UCUCGACCCGCUC
                         ****                                     ****                 

------- SECIS element -- id:2 -- grade:B ----
 Chromosome = CM007941.1:subseq_35579421,102214_ Strand = - Positions = 23625 - 23556
 Found by:  Infernal (score=11.52) Covels (score=1.71)
 Stem2 length = 8   Apical loop length = 11   Insertion in stem2 = 0, 0
 Free Energy = -13.82

         ..(((((((.......(((((((((((((((...............)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         .(((({(((.......([[{(({(({((((------((.......))))))}))}))}]])..--....)))})))).
 target  UGGUGUGUUUGGAACAUGAUAGUUUGUUGG------UGAUGUGGACACCAAGGAUCUUGAAAC--UCUCAACCCACUC
                         ****                                     ****                 

------- SECIS element -- id:3 -- grade:C ----
 Chromosome = CM007941.1:subseq_35579421,102214_ Strand = - Positions = 97504 - 97427
 Found by:  Infernal (score=10.48)
 Stem2 length = 8   Apical loop length = 21   Insertion in stem2 = 0, 0
 Free Energy = -10.8

         ..(((((((.......(((((((((((((((...................)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcC----cuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         ...([([(((--....{[[{{(((({((((.....................))))}))))}}]]}..--...)))])])...
 target  GAGAGAACAG--UCUAUGACUAGGGUGGCUGGAGUCUUUGACAAUUUUUAGGGCCUUCCUCUGACGC--CGCCUGGUAUAGA
                         ****                                         ****                 

------- SECIS element -- id:4 -- grade:B ----
 Chromosome = CM007941.1:subseq_35579421,102214_ Strand = + Positions = 36894 - 36985
 Found by:  Infernal (score=10.42) Covels (score=1.37)
 Stem2 length = 7   Apical loop length = 23   Insertion in stem2 = 1, 0
 Free Energy = -5.35

         ..(((((((.............((((((((((.(((((...................)))))))))))))))............)))))))..
 model   uucggucaugcg------UuaAUGAcGgccug-gcccuAAAcC----cuuuuuggggcgggccaggcCuGAUGuu---u-uuucaugaccggc
         ...((((((.............([[((((({{.(((.......................)))}})))))]])........-...))))))...
 target  CCCCUUUUUCCUCCAAACAUAAUGAUGGUCAUUAUGUCCAAACAGUUCUAUUUUUGUUUCAUCAGACCAGAGGAUAUUUC-UCCAAAAAGUAC
                               ****             ^^                           ****